3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
UGCAUGG*UCUGUGAUG
Length
16 nucleotides
Bulged bases
5DAT|1|6|C|1274, 5DAT|1|6|U|1432, 5DAT|1|6|G|1435
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DAT_495 not in the Motif Atlas
Homologous match to IL_8P9A_439
Geometric discrepancy: 0.0829
The information below is about IL_8P9A_439
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86012.1
Basepair signature
cWW-tHS-tWH-cWH-cWW-L-L-cWW
Number of instances in this motif group
1

Unit IDs

5DAT|1|6|U|1272
5DAT|1|6|G|1273
5DAT|1|6|C|1274
5DAT|1|6|A|1275
5DAT|1|6|U|1276
5DAT|1|6|G|1277
5DAT|1|6|G|1278
*
5DAT|1|6|U|1430
5DAT|1|6|C|1431
5DAT|1|6|U|1432
5DAT|1|6|G|1433
5DAT|1|6|U|1434
5DAT|1|6|G|1435
5DAT|1|6|A|1436
5DAT|1|6|U|1437
5DAT|1|6|G|1438

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c0
40S ribosomal protein S10-A
Chain d0
40S ribosomal protein S20
Chain d9
40S ribosomal protein S29-A
Chain e1
Ubiquitin-40S ribosomal protein S31
Chain s3
40S ribosomal protein S3

Coloring options:


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