IL_5DC3_119

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCACAC*GCGUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DC3_119 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.368

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5DC3|1|1|C|3161
5DC3|1|1|C|3162
5DC3|1|1|A|3163
5DC3|1|1|C|3164
5DC3|1|1|A|3165
5DC3|1|1|C|3166
*
5DC3|1|1|G|3284
5DC3|1|1|C|3285
5DC3|1|1|G|3286
5DC3|1|1|U|3287
5DC3|1|1|G|3288
5DC3|1|1|G|3289

Current chains

Chain 1

25S ribosomal RNA

Nearby chains