IL_5DC3_166
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DC3_166 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0746
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5DC3|1|2|C|627
5DC3|1|2|G|628
5DC3|1|2|U|629
5DC3|1|2|A|630
5DC3|1|2|G|631
*
5DC3|1|2|U|968
5DC3|1|2|C|969
5DC3|1|2|A|970
5DC3|1|2|A|971
5DC3|1|2|G|972
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C1
- 40S ribosomal protein S11-A
- Chain C3
- 40S ribosomal protein S13
- Chain D2
- 40S ribosomal protein S22-A
- Chain D3
- 40S ribosomal protein S23-A
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