IL_5DC3_425
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5DC3|1|6|C|1158, 5DC3|1|6|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DC3_425 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.085
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
5DC3|1|6|A|1157
5DC3|1|6|C|1158
5DC3|1|6|C|1159
5DC3|1|6|A|1160
*
5DC3|1|6|U|1617
5DC3|1|6|C|1618
5DC3|1|6|C|1619
5DC3|1|6|C|1620
5DC3|1|6|U|1621
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain d0
- 40S ribosomal protein S20
- Chain d8
- 40S ribosomal protein S28-A
- Chain s5
- 40S ribosomal protein S5
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