IL_5DC3_442
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5DC3|1|6|A|1516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DC3_442 not in the Motif Atlas
- Homologous match to IL_8P9A_449
- Geometric discrepancy: 0.2046
- The information below is about IL_8P9A_449
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22564.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DC3|1|6|G|1488
5DC3|1|6|U|1489
5DC3|1|6|C|1490
5DC3|1|6|U|1491
5DC3|1|6|A|1492
5DC3|1|6|A|1493
5DC3|1|6|C|1494
*
5DC3|1|6|G|1513
5DC3|1|6|U|1514
5DC3|1|6|A|1515
5DC3|1|6|A|1516
5DC3|1|6|U|1517
5DC3|1|6|C|1518
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c9
- 40S ribosomal protein S19-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain s3
- 40S ribosomal protein S3
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