IL_8P9A_449

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUCUAAC*GUAAUC

Length

13 nucleotides

Bulged bases

8P9A|1|sR|U|1491, 8P9A|1|sR|A|1516, 8P9A|1|sR|U|1517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22564.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8P9A|1|sR|G|1488
8P9A|1|sR|U|1489
8P9A|1|sR|C|1490
8P9A|1|sR|U|1491
8P9A|1|sR|A|1492
8P9A|1|sR|A|1493
8P9A|1|sR|C|1494
*
8P9A|1|sR|G|1513
8P9A|1|sR|U|1514
8P9A|1|sR|A|1515
8P9A|1|sR|A|1516
8P9A|1|sR|U|1517
8P9A|1|sR|C|1518

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c9

40S ribosomal protein S19-A

Chain d0

Small ribosomal subunit protein uS10

Chain d9

Small ribosomal subunit protein uS14A

Chain s3

Small ribosomal subunit protein uS3