IL_5DCV_004
3D structure
- PDB id
- 5DCV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of PhoRpp38-SL12M complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGGUGAAG*CGAG
- Length
- 12 nucleotides
- Bulged bases
- 5DCV|1|B|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DCV_004 not in the Motif Atlas
- Geometric match to IL_5DCV_008
- Geometric discrepancy: 0.0989
- The information below is about IL_5DCV_008
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_74051.1
- Basepair signature
- cWW-tSS-tSH-L-tHS-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5DCV|1|B|C|18
5DCV|1|B|G|19
5DCV|1|B|G|20
5DCV|1|B|U|21
5DCV|1|B|G|22
5DCV|1|B|A|23
5DCV|1|B|A|24
5DCV|1|B|G|25
*
5DCV|1|B|C|32
5DCV|1|B|G|33
5DCV|1|B|A|34
5DCV|1|B|G|35
Current chains
- Chain B
- RNA (47-MER)
Nearby chains
- Chain A
- 50S ribosomal protein L7Ae
- Chain D
- RNA (47-MER)
Coloring options: