IL_5DCV_009

3D structure

PDB id

5DCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of PhoRpp38-SL12M complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAUG*CUAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DCV_009 not in the Motif Atlas

Geometric match to IL_5DCV_010

Geometric discrepancy: 0.1295

The information below is about IL_5DCV_010

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_95104.1

Basepair signature

cWW-tWH-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

5DCV|1|B|U|3
5DCV|1|B|A|4
5DCV|1|B|U|5
5DCV|1|B|G|6
*
5DCV|1|B|C|45
5DCV|1|B|U|46
5DCV|1|B|A|47
5DCV|1|B|A|48
5DCV|1|B|G|49

Current chains

Chain B

RNA (47-MER)

Nearby chains

Chain C

50S ribosomal protein L7Ae

Chain D

RNA (47-MER)