IL_5DFE_029

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

5DFE|1|QA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_029 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0726

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5DFE|1|QA|G|662
5DFE|1|QA|A|663
5DFE|1|QA|G|664
5DFE|1|QA|A|665
5DFE|1|QA|G|666
*
5DFE|1|QA|U|740
5DFE|1|QA|G|741
5DFE|1|QA|G|742
5DFE|1|QA|U|743

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QF

30S ribosomal protein S6

Chain QO

30S ribosomal protein S15

Chain QR

30S ribosomal protein S18