IL_5DGE_153

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

5DGE|1|2|U|313, 5DGE|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_153 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0815

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5DGE|1|2|U|311
5DGE|1|2|A|312
5DGE|1|2|U|313
5DGE|1|2|C|314
5DGE|1|2|A|315
5DGE|1|2|A|316
*
5DGE|1|2|U|348
5DGE|1|2|U|349
5DGE|1|2|U|350
5DGE|1|2|C|351
5DGE|1|2|A|352
5DGE|1|2|A|353
5DGE|1|2|C|354
5DGE|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain D3

40S ribosomal protein S23-A

Chain S8

40S ribosomal protein S8-A