IL_5DGE_166

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5DGE|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_166 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1088

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

5DGE|1|2|G|616
5DGE|1|2|U|617
5DGE|1|2|U|618
5DGE|1|2|A|619
5DGE|1|2|A|620
5DGE|1|2|A|621
5DGE|1|2|A|622
*
5DGE|1|2|U|1104
5DGE|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain D6

40S ribosomal protein S26-A