IL_5DGE_354

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

5DGE|1|5|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_354 not in the Motif Atlas

Homologous match to IL_5TBW_120

Geometric discrepancy: 0.0725

The information below is about IL_5TBW_120

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

5DGE|1|5|A|3103
5DGE|1|5|U|3104
5DGE|1|5|U|3105
5DGE|1|5|A|3106
5DGE|1|5|U|3107
*
5DGE|1|5|A|3127
5DGE|1|5|G|3128
5DGE|1|5|A|3129
5DGE|1|5|A|3130
5DGE|1|5|U|3131

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l9

60S ribosomal protein L9-A

Chain m6

60S ribosomal protein L16-A

Chain q0

Ubiquitin-60S ribosomal protein L40