IL_5DGE_510

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_510 not in the Motif Atlas

Homologous match to IL_8P9A_385

Geometric discrepancy: 0.2565

The information below is about IL_8P9A_385

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

5DGE|1|2|C|186
5DGE|1|2|G|187
5DGE|1|2|A|188
5DGE|1|2|C|189
*
5DGE|1|2|G|196
5DGE|1|2|A|197
5DGE|1|2|A|198
5DGE|1|2|G|199

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S8

40S ribosomal protein S8-A