IL_8P9A_385

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8P9A|1|sR|C|186
8P9A|1|sR|G|187
8P9A|1|sR|A|188
8P9A|1|sR|C|189
*
8P9A|1|sR|G|196
8P9A|1|sR|A|197
8P9A|1|sR|A|198
8P9A|1|sR|G|199

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain s8

40S ribosomal protein S8-A