IL_5DGF_472

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACUUG*CUUGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGF_472 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3685

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5DGF|1|1|C|3233
5DGF|1|1|A|3234
5DGF|1|1|C|3235
5DGF|1|1|U|3236
5DGF|1|1|U|3237
5DGF|1|1|G|3238
*
5DGF|1|1|C|3249
5DGF|1|1|U|3250
5DGF|1|1|U|3251
5DGF|1|1|G|3252
5DGF|1|1|G|3253
5DGF|1|1|G|3254

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M6

60S ribosomal protein L16-A