IL_5DGV_062

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_062 not in the Motif Atlas

Homologous match to IL_5TBW_062

Geometric discrepancy: 0.0443

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5DGV|1|1|G|1500
5DGV|1|1|U|1501
5DGV|1|1|C|1502
5DGV|1|1|A|1503
5DGV|1|1|A|1504
5DGV|1|1|C|1505
*
5DGV|1|1|G|1513
5DGV|1|1|G|1514
5DGV|1|1|A|1515
5DGV|1|1|C|1516

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M7

60S ribosomal protein L17-A

Chain M9

60S ribosomal protein L19-A

Chain O9

60S ribosomal protein L39