IL_5DGV_200
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 5DGV|1|2|U|1432, 5DGV|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGV_200 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.107
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5DGV|1|2|U|1276
5DGV|1|2|G|1277
5DGV|1|2|G|1278
*
5DGV|1|2|U|1430
5DGV|1|2|C|1431
5DGV|1|2|U|1432
5DGV|1|2|G|1433
5DGV|1|2|U|1434
5DGV|1|2|G|1435
5DGV|1|2|A|1436
Current chains
- Chain 2
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain C0
- 40S ribosomal protein S10-A
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain S3
- 40S ribosomal protein S3
- Chain SM
- Suppressor protein STM1
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