IL_5DGV_300

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

5DGV|1|5|U|1820, 5DGV|1|5|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_300 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.2016

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5DGV|1|5|G|1623
5DGV|1|5|G|1624
5DGV|1|5|A|1625
*
5DGV|1|5|U|1818
5DGV|1|5|U|1819
5DGV|1|5|U|1820
5DGV|1|5|U|1821
5DGV|1|5|C|1822

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o4

60S ribosomal protein L34-A