IL_5DGV_364

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

5DGV|1|5|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_364 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.0525

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5DGV|1|5|G|3328
5DGV|1|5|U|3329
5DGV|1|5|A|3330
*
5DGV|1|5|U|3373
5DGV|1|5|U|3374
5DGV|1|5|A|3375
5DGV|1|5|A|3376
5DGV|1|5|G|3377
5DGV|1|5|C|3378

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain n4

60S ribosomal protein L24-A

Chain o1

60S ribosomal protein L31-A