IL_5DGV_414

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_414 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.0753

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5DGV|1|6|G|871
5DGV|1|6|G|872
5DGV|1|6|U|873
5DGV|1|6|C|874
*
5DGV|1|6|G|953
5DGV|1|6|G|954
5DGV|1|6|A|955
5DGV|1|6|C|956

Current chains

Chain 6

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain c3

40S ribosomal protein S13

Chain d7

40S ribosomal protein S27-A

Chain s1

40S ribosomal protein S1-A