IL_5DM6_006
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM6_006 not in the Motif Atlas
- Geometric match to IL_7A0S_006
- Geometric discrepancy: 0.0849
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
5DM6|1|X|G|165|||B
5DM6|1|X|G|165|||C
5DM6|1|X|A|165|||D
5DM6|1|X|A|165|||E
5DM6|1|X|C|165|||F
5DM6|1|X|U|165|||G
5DM6|1|X|G|166
*
5DM6|1|X|C|173
5DM6|1|X|U|174
5DM6|1|X|C|175
5DM6|1|X|A|176
5DM6|1|X|G|177
5DM6|1|X|U|178
5DM6|1|X|A|179
5DM6|1|X|C|180
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L28
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