IL_5DM6_007

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_007 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.088

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

5DM6|1|X|G|210
5DM6|1|X|U|211
5DM6|1|X|U|212
5DM6|1|X|A|213
5DM6|1|X|G|214
5DM6|1|X|U|215
5DM6|1|X|A|216
5DM6|1|X|G|217
*
5DM6|1|X|C|225
5DM6|1|X|G|226
5DM6|1|X|A|227
5DM6|1|X|A|228
5DM6|1|X|C|229
5DM6|1|X|C|230
5DM6|1|X|C|231

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15