IL_5DM6_030
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM6_030 not in the Motif Atlas
- Homologous match to IL_4WF9_033
- Geometric discrepancy: 0.1052
- The information below is about IL_4WF9_033
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.1
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
5DM6|1|X|G|864
5DM6|1|X|C|865
5DM6|1|X|A|866
5DM6|1|X|C|867
5DM6|1|X|U|868
*
5DM6|1|X|A|909
5DM6|1|X|A|910
5DM6|1|X|A|911
5DM6|1|X|C|912
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L25
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: