IL_5DM6_041
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 5DM6|1|X|U|1045, 5DM6|1|X|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM6_041 not in the Motif Atlas
- Homologous match to IL_9DFE_041
- Geometric discrepancy: 0.3336
- The information below is about IL_9DFE_041
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5DM6|1|X|C|1043
5DM6|1|X|A|1044
5DM6|1|X|U|1045
5DM6|1|X|A|1046
5DM6|1|X|G|1047
5DM6|1|X|A|1048
5DM6|1|X|C|1049
5DM6|1|X|A|1050
5DM6|1|X|G|1051
*
5DM6|1|X|U|1108
5DM6|1|X|C|1109
5DM6|1|X|G|1110
5DM6|1|X|A|1111
5DM6|1|X|G|1112
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L6
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