IL_5DM6_042

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

5DM6|1|X|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_042 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.394

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

5DM6|1|X|G|1059
5DM6|1|X|U|1060
5DM6|1|X|U|1061
5DM6|1|X|G|1062
*
5DM6|1|X|C|1076
5DM6|1|X|A|1077
5DM6|1|X|C|1078
5DM6|1|X|C|1079

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L11

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25