IL_5DM6_046

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5DM6|1|X|A|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1236

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5DM6|1|X|C|1208
5DM6|1|X|G|1209
5DM6|1|X|G|1210
5DM6|1|X|A|1211
5DM6|1|X|G|1212
5DM6|1|X|A|1213
5DM6|1|X|A|1214
5DM6|1|X|G|1215
*
5DM6|1|X|U|1234
5DM6|1|X|G|1235
5DM6|1|X|G|1236
5DM6|1|X|A|1237
5DM6|1|X|G|1238

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22