IL_5DM6_056

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAU*AAACG

Length

9 nucleotides

Bulged bases

5DM6|1|X|C|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_056 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.0996

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5DM6|1|X|C|1437
5DM6|1|X|U|1438
5DM6|1|X|A|1439
5DM6|1|X|U|1440
*
5DM6|1|X|A|1551
5DM6|1|X|A|1552
5DM6|1|X|A|1553
5DM6|1|X|C|1554
5DM6|1|X|G|1555

Current chains

Chain X

23S ribosomal RNA

Nearby chains