IL_5DM6_058

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCUC*GAC

Length

7 nucleotides

Bulged bases

5DM6|1|X|C|1473|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_058 not in the Motif Atlas

Geometric match to IL_4P3T_005

Geometric discrepancy: 0.3014

The information below is about IL_4P3T_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

5DM6|1|X|G|1473
5DM6|1|X|C|1473|||A
5DM6|1|X|U|1474
5DM6|1|X|C|1475
*
5DM6|1|X|G|1517
5DM6|1|X|A|1518
5DM6|1|X|C|1519

Current chains

Chain X

23S ribosomal RNA

Nearby chains