IL_5DM6_063
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UAA*UCA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM6_063 not in the Motif Atlas
- Homologous match to IL_7A0S_060
- Geometric discrepancy: 0.0971
- The information below is about IL_7A0S_060
- Detailed Annotation
- Isolated tWW turn
- Broad Annotation
- No text annotation
- Motif group
- IL_10432.1
- Basepair signature
- cWW-tWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
5DM6|1|X|U|1663
5DM6|1|X|A|1664
5DM6|1|X|A|1665
*
5DM6|1|X|U|1995
5DM6|1|X|C|1996
5DM6|1|X|A|1997
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L14
- Chain M
- 50S ribosomal protein L19
Coloring options: