IL_5DM6_074

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_074 not in the Motif Atlas

Geometric match to IL_3MOJ_002

Geometric discrepancy: 0.2193

The information below is about IL_3MOJ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5DM6|1|X|C|1908
5DM6|1|X|C|1909
5DM6|1|X|G|1910
*
5DM6|1|X|C|1920
5DM6|1|X|G|1921
5DM6|1|X|G|1922

Current chains

Chain X

23S ribosomal RNA

Nearby chains