IL_5DM6_087

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_087 not in the Motif Atlas

Geometric match to IL_7TZS_001

Geometric discrepancy: 0.3881

The information below is about IL_7TZS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14688.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5DM6|1|X|G|2127
5DM6|1|X|C|2128
5DM6|1|X|C|2129
*
5DM6|1|X|G|2159
5DM6|1|X|G|2160
5DM6|1|X|C|2161

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L1