IL_5DM6_096

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_096 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1001

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5DM6|1|X|A|2459
5DM6|1|X|U|2460
5DM6|1|X|C|2461
*
5DM6|1|X|G|2489
5DM6|1|X|G|2490
5DM6|1|X|U|2491
5DM6|1|X|U|2492
5DM6|1|X|U|2493

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27