IL_5DM6_108

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5DM6|1|X|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_108 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.0577

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5DM6|1|X|G|2737
5DM6|1|X|A|2738
5DM6|1|X|U|2739
5DM6|1|X|A|2740
5DM6|1|X|A|2741
5DM6|1|X|C|2742
*
5DM6|1|X|G|2762
5DM6|1|X|G|2763
5DM6|1|X|A|2764
5DM6|1|X|A|2765
5DM6|1|X|G|2766
5DM6|1|X|C|2767

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13