IL_5DM6_115

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24024.1

Basepair signature

cWW-cSH-L-cWS-tSW-R-R-cWW

Number of instances in this motif group

11

Unit IDs

5DM6|1|Y|A|36
5DM6|1|Y|C|37
5DM6|1|Y|C|38
5DM6|1|Y|C|39
5DM6|1|Y|C|40
*
5DM6|1|Y|G|46
5DM6|1|Y|A|47
5DM6|1|Y|A|48
5DM6|1|Y|C|49
5DM6|1|Y|U|50

Current chains

Chain Y

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18

Chain X

Large subunit ribosomal RNA; LSU rRNA