IL_5DM6_124

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAACUUUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_124 not in the Motif Atlas

Homologous match to IL_7A0S_109

Geometric discrepancy: 0.0708

The information below is about IL_7A0S_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5DM6|1|X|G|1666
5DM6|1|X|G|1667
5DM6|1|X|A|1668
5DM6|1|X|A|1669
5DM6|1|X|C|1670
5DM6|1|X|U|1671
5DM6|1|X|U|1672
5DM6|1|X|U|1673
5DM6|1|X|G|1674
*
5DM6|1|X|C|1990
5DM6|1|X|U|1991
5DM6|1|X|G|1992
5DM6|1|X|U|1993
5DM6|1|X|C|1994

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14