IL_5DM6_129

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

5DM6|1|X|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_129 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1246

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5DM6|1|X|G|1319
5DM6|1|X|G|1320
5DM6|1|X|A|1321
5DM6|1|X|A|1322
5DM6|1|X|G|1323
*
5DM6|1|X|C|1331
5DM6|1|X|G|1332
5DM6|1|X|C|1333

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22