IL_5DM6_131
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAG*CAACGGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- 5DM6|1|X|A|2163, 5DM6|1|X|A|2169, 5DM6|1|X|U|2172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM6_131 not in the Motif Atlas
- Homologous match to IL_3U4M_003
- Geometric discrepancy: 0.5688
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
5DM6|1|X|G|2124
5DM6|1|X|G|2125
5DM6|1|X|A|2126
5DM6|1|X|G|2127
*
5DM6|1|X|C|2161
5DM6|1|X|A|2162
5DM6|1|X|A|2163
5DM6|1|X|C|2164
5DM6|1|X|G|2165
5DM6|1|X|G|2166
5DM6|1|X|U|2167
5DM6|1|X|G|2168
5DM6|1|X|A|2169
5DM6|1|X|A|2170
5DM6|1|X|A|2171
5DM6|1|X|U|2172
5DM6|1|X|A|2173
5DM6|1|X|C|2174
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L1
Coloring options: