IL_5DM8_004
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGAG*CUUUGACU
- Length
- 13 nucleotides
- Bulged bases
- 5DM8|1|X|U|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_004 not in the Motif Atlas
- Geometric match to IL_7A0S_004
- Geometric discrepancy: 0.1263
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5DM8|1|X|A|81
5DM8|1|X|C|82
5DM8|1|X|G|83
5DM8|1|X|A|84
5DM8|1|X|G|85
*
5DM8|1|X|C|98
5DM8|1|X|U|99
5DM8|1|X|U|100
5DM8|1|X|U|101
5DM8|1|X|G|102
5DM8|1|X|A|103
5DM8|1|X|C|104
5DM8|1|X|U|105
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain R
- 50S ribosomal protein L24
- Chain V
- 50S ribosomal protein L29
Coloring options: