IL_5DM8_014
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5DM8|1|X|G|801, 5DM8|1|X|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_014 not in the Motif Atlas
- Geometric match to IL_7A0S_015
- Geometric discrepancy: 0.0937
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
5DM8|1|X|G|674
5DM8|1|X|A|675
5DM8|1|X|A|676
5DM8|1|X|A|677
5DM8|1|X|C|678
*
5DM8|1|X|G|799
5DM8|1|X|A|800
5DM8|1|X|G|801
5DM8|1|X|A|802
5DM8|1|X|U|803
5DM8|1|X|A|804
5DM8|1|X|G|805
5DM8|1|X|C|806
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
Coloring options: