IL_5DM8_043

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5DM8|1|X|A|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_043 not in the Motif Atlas

Geometric match to IL_7A0S_043

Geometric discrepancy: 0.1174

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

5DM8|1|X|C|1208
5DM8|1|X|G|1209
5DM8|1|X|G|1210
5DM8|1|X|A|1211
5DM8|1|X|G|1212
5DM8|1|X|A|1213
5DM8|1|X|A|1214
5DM8|1|X|G|1215
*
5DM8|1|X|U|1234
5DM8|1|X|G|1235
5DM8|1|X|G|1236
5DM8|1|X|A|1237
5DM8|1|X|G|1238

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22