IL_5DM8_050

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

5DM8|1|X|G|1414, 5DM8|1|X|U|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_050 not in the Motif Atlas

Geometric match to IL_7A0S_050

Geometric discrepancy: 0.3094

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5DM8|1|X|U|1412
5DM8|1|X|G|1413
5DM8|1|X|G|1414
5DM8|1|X|A|1415
5DM8|1|X|G|1416
*
5DM8|1|X|C|1582
5DM8|1|X|G|1583
5DM8|1|X|U|1584
5DM8|1|X|U|1585
5DM8|1|X|G|1586
5DM8|1|X|A|1587
5DM8|1|X|A|1588
5DM8|1|X|A|1589

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains