IL_5DM8_069
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCAAG*UGAAGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_069 not in the Motif Atlas
- Geometric match to IL_9E6Q_072
- Geometric discrepancy: 0.3099
- The information below is about IL_9E6Q_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74322.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
5DM8|1|X|G|1850
5DM8|1|X|U|1851
5DM8|1|X|C|1852
5DM8|1|X|A|1853
5DM8|1|X|A|1854
5DM8|1|X|G|1855
*
5DM8|1|X|U|1887
5DM8|1|X|G|1888
5DM8|1|X|A|1889
5DM8|1|X|A|1890
5DM8|1|X|G|1891
5DM8|1|X|C|1892
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain U
- 50S ribosomal protein L28
Coloring options: