IL_5DOX_124

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAG*CUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAAG,CUUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_124 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.278

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5DOX|1|1a|G|139
5DOX|1|1a|A|140
5DOX|1|1a|A|141
5DOX|1|1a|G|142
*
5DOX|1|1a|C|221
5DOX|1|1a|U|222
5DOX|1|1a|U|223
5DOX|1|1a|C|224

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20