IL_5DOY_227

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOY_227 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3925

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5DOY|1|2A|G|1319
5DOY|1|2A|C|1320
5DOY|1|2A|A|1321
5DOY|1|2A|A|1322
5DOY|1|2A|U|1323
5DOY|1|2A|G|1324
*
5DOY|1|2A|C|1330
5DOY|1|2A|A|1331
5DOY|1|2A|G|1332
5DOY|1|2A|C|1333

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S Ribosomal Protein L22

Chain 2X

50S Ribosomal Protein L23