IL_5E7K_135

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGGAG*CGAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_135 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3619

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

5E7K|1|14|G|1855
5E7K|1|14|G|1856
5E7K|1|14|G|1857
5E7K|1|14|G|1858
5E7K|1|14|A|1859
5E7K|1|14|G|1860
*
5E7K|1|14|C|1882
5E7K|1|14|G|1883
5E7K|1|14|A|1884
5E7K|1|14|A|1885
5E7K|1|14|C|1886
5E7K|1|14|C|1887

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain 79

50S ribosomal protein L1

Chain F5

50S ribosomal protein L28