3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
5E7K|1|14|A|1938, 5E7K|1|14|U|1944, 5E7K|1|14|U|1963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_137 not in the Motif Atlas
Homologous match to IL_4WF9_077
Geometric discrepancy: 0.1099
The information below is about IL_4WF9_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

5E7K|1|14|C|1934
5E7K|1|14|G|1935
5E7K|1|14|A|1936
5E7K|1|14|A|1937
5E7K|1|14|A|1938
5E7K|1|14|U|1939
5E7K|1|14|U|1940
5E7K|1|14|C|1941
5E7K|1|14|C|1942
5E7K|1|14|U|1943
5E7K|1|14|U|1944
5E7K|1|14|G|1945
*
5E7K|1|14|C|1961
5E7K|1|14|C|1962
5E7K|1|14|U|1963
5E7K|1|14|G|1964

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain 1G
Small subunit ribosomal RNA; SSU rRNA
Chain 1L
Transfer RNA; tRNA

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