IL_5E81_111

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

5E81|1|14|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_111 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3842

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5E81|1|14|G|1319
5E81|1|14|C|1320
5E81|1|14|A|1321
5E81|1|14|A|1322
5E81|1|14|U|1323
5E81|1|14|G|1324
*
5E81|1|14|C|1330
5E81|1|14|A|1331
5E81|1|14|G|1332
5E81|1|14|C|1333

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L22

Chain B5

50S ribosomal protein L23