IL_5E81_208
3D structure
- PDB id
- 5E81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5E81_208 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.0921
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
5E81|1|1G|U|580
5E81|1|1G|G|581
5E81|1|1G|U|582
5E81|1|1G|A|583
5E81|1|1G|G|584
*
5E81|1|1G|U|757
5E81|1|1G|G|758
5E81|1|1G|A|759
5E81|1|1G|G|760
5E81|1|1G|G|761
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3A
- 30S ribosomal protein S12
- Chain 6A
- 30S ribosomal protein S15
- Chain 8A
- 30S ribosomal protein S17
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