3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL4_036 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0821
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

5EL4|1|13|G|887
5EL4|1|13|G|888
5EL4|1|13|A|889
5EL4|1|13|G|890
5EL4|1|13|U|891
5EL4|1|13|A|892
5EL4|1|13|C|893
5EL4|1|13|G|894
*
5EL4|1|13|U|905
5EL4|1|13|G|906
5EL4|1|13|A|907
5EL4|1|13|A|908
5EL4|1|13|A|909
5EL4|1|13|C|910

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 3I
30S ribosomal protein S12
Chain 8I
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2096 s