IL_5EL4_278

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5EL4|1|1H|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_278 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0803

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5EL4|1|1H|G|1031
5EL4|1|1H|A|1032
5EL4|1|1H|U|1033
5EL4|1|1H|G|1034
*
5EL4|1|1H|C|1121
5EL4|1|1H|G|1122
5EL4|1|1H|C|1123

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 88

50S ribosomal protein L16